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cbrown5/remixsiar
Post-processing of stable isotope mixing models
Package index
Search the cbrown5/remixsiar package
Functions
68
Source code
39
Man pages
32
calc_eval_measures:
Functions to calculate information divergence measures for...
calchell:
Functions to calculate evaluation measures
calckl:
Functions to calculate evaluation measures
calcmkl:
Functions to calculate evaluation measures
calcvarbia:
Functions to calculate evaluation measures
default_prior:
Default priors for the simmr package
drawpriors:
Random draws from simmr prior distributions
group_sources:
Regroup sources into n-1 groups based on Pianka's measure
gulls:
Gulls data-set
gulls_clone:
Output of simmr analysis on cloned gull data
gulls_out:
Output of simmr analysis on cloned gull data
gulls_poly:
Gulls outside the polygon data-set
gulls_small:
Gulls data-set with small sample size
iterative_grp:
Iteratively apply 'group_sources' or 'rm_sources'
mixsiar_fitsims:
Fits a MixSIAR model to a randomly generated data-set
pianka:
Calculate Pianka's similarity measure on sources
plot_dists:
Calculates Hellinger distance and plot prior and posterior...
post_chains:
Extract chains for the posterior distribution
remix_2DPI:
Isospace plots of model predicted consumer isotope ratios
remix_hellinger:
Estimate the Hellinger distance between priors and posteriors
remix_kldiv:
Estimate the Kullback-Leibler divergence between priors and...
remix_pca:
Perform a principal components analysis on posterior chains
remix_pcaplot:
Plot the axes loadings from a PCA
remix_PI:
Estimate predictive intervals for consumer isotope ratios
remix_shrink:
Calculate posterior shrink on parameter estimates
remixsiar:
Tools for model checking of Bayesian isotope mixing models
rm_sources:
Remove similar sources to make n-1 groups based on Pianka's...
simdata:
Simulate consumer isotope ratios to evaluate posterior model...
simdata_priors:
Simulate consumer isotope ratios to evaluate priors
simmr_clone:
Clone a data-frame then run a simmr model
simmr_fitsims:
Fits a simmr model to a randomly generated data-set
squid:
Squid data-set
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cbrown5/remixsiar: Post-processing of stable isotope mixing models